FPGA Acceleration of Sequence Analysis Tools in Bioinformatics
نویسندگان
چکیده
منابع مشابه
Image Processing Using Reconfigurable Hardware
FPGA based hardware accelerators have become more and more important for bioinformatics applications. These applications use wide range of algorithms, including searches in large databases, sequence alignment, statistical analysis and image processing. A part of these algorithms can be efficiently accelerated using FPGA devices. Biological and biomedical experiments like microarray experiments ...
متن کاملFPGA architecture for pairwise statistical significance estimation
Sequence comparison is one of the most fundamental computational problems in bioinformatics. Pairwise sequence alignment methods align two sequences using a substitution matrix consisting of pairwise scores of aligning different residues with each other (like BLOSUM62), and give an alignment score for the given sequence-pair. This work 1 addresses the problem of accurately estimating statistica...
متن کاملThèse / Ens Cachan -bretagne Acceleration of a Bioinformatics Application Using High-level Synthesis
école doctorale mATiSSE présentée par Naeem Abbas Préparée à l'Unité Mixte de Recherche 6074 Institut de recherche en informatique et systèmes aléatoires Abstract The revolutionary advancements in the field of bioinformatics have opened new horizons in biological and pharmaceutical research. However, the existing bioinformatics tools are unable to meet the computational demands, due to the rece...
متن کاملCloning, molecular analysis and epitopics prediction of a new chaperone GroEL Brucella melitensis antigen
Objective(s):Brucellosis is a well-known domestic animal infectious disease, which is caused by Brucella bacterium. GroEL antigen increases Brucella survival and is one of the major antigens that stimulates the immune system. Hence, the objective of the present study was cloning and bioinformatics analysis of GroEL gene. Materials and Methods: The full-length open reading frame of this gene was...
متن کاملFPGA-Based Accelerators for Bioinformatics Applications
The recent and astonishing advances in Molecular Biology, which led to the sequencing of an unprecedented number of genomes, including the human, would not have been possible without the help of Bioinformatics. Bioinformatics can be defined as a research area where computational tools and algorithms are developed to help biologists in the task of understanding the organisms. Some Bioinformatics...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2014